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阮雪芬 教授 (Hsueh-Fen Juan, Professor)

 
職　稱 教授
出生年 1969
最高學歷 國立台灣大學博士
專　長 系統生物學、生物資訊學、蛋白質體學
E-mail yukijuan@ntu.edu.tw
研究室 生命科學館 1105 室;系統生物學研究室網頁
電話 02-33664536
傳真 02-33662478
近年研究主題
  • 調控 ATP 合成酉每基因之微 RNA 功能及演化 。
  • 幽門桿菌感染胃癌細胞之基因網路研究 : annexin A4 相關的訊息傳遞及調控機制 。
  • 利用系統生物學開發抗肺癌藥物 : 以 ATP 合成酉每抑制劑進行標靶治療及機制探討 。
研究室簡介：系統生物學研究室

　　系統生物學是在生物學上一個新興的領域，它著重於以系統的觀點來了解生物系統的運作。由於高通量藥物合成、蛋白質體、微陣列、次世代定序及生物資訊技術的發展，使得系統生物學的研究愈發可行了。生物轉變的整體研究將能加快闡明生化路徑及疾病治療的速度。除此之外，系統生物學也著重於描述和了解複雜的生物系統如何運作以及發展預測人類疾病的模式。 本研究室主要以系統生物學探討藥物在癌細胞的作用機制，內容包括各蛋白質間交互作用的預測和建構、基因網絡的模擬和建構，及微型 RNA 於其調控的蛋白質間交互作用及網路關係，期望進一步達到開發新藥的目地。 主要的目標是利用系統生物學研究法來研究在 ATP 合成酉每抑制劑誘導下乳癌及肺癌細胞進行細胞凋亡的作用機制；同時， 利用系統生物學研究法來開發新的藥物。

 

P1030172.JPG

 

代表著作

期刊論文：

  1. Lin, L.-L., Huang, H.-C. * and Juan, H.-F. * "Discovery of biomarkers for gastric cancer: a proteomics approach" Journal of Proteomics (In press)
  2. Lin, C.-C., Chen, Y.-J., Chen, C.-Y., Oyang, Y.-J., Juan, H.-F.* and Huang, H.-C.* (2012) "Crosstalk between transcription factors and microRNAs in human protein interaction network" BMC Systems Biology 6(1):18.
  3. Shih, Y.-Y., Nakagawara, A., Lee, H., Juan, H.-F., Jeng, Y.-M., Lin, D.-T., Yang, Y.-L., Tsay, Y.-G., Huang, M.-C., Pan, C.-Y. *, Hsu, W.-M.*, and Liao, Y.-F.* (2011) "Calreticulin mediates nerve growth factor-induced neuronal differentiation" Journal of Molecular Neuroscience (In press).
  4. Hu, C.-W., Chang, Y.-L., Chen, S. J., Kuo-Huang, L.-L., Liao, J. C., Huang, H.-C.*, Juan, H.-F.* (2011) "Revealing the functions of the transketolase enzyme isoforms in Rhodopseudomonas palustris using a systems biology approach" PLoS ONE 6:e28329.
  5. Huang, T.-C., Chang, H.-Y., Chen, C.-Y., Wu, P.-Y., Lee, H., Liao, Y.-F., Hsu, W.-M.*, Huang, H.-C.*, Juan, H.-F.* (2011) "Silencing of miR-124 induces neuroblastoma SK-N-SH cell differentiation, cell cycle arrest and apoptosis through promoting AHR" FEBS Letters 585:3582-3586.
  6. Tsai, S.-R.#, Huang, T.-C.#, Liang, C.-M., Chang, H.-Y., Chang, Y.-T., Huang, H.-C., Juan, H.-F.*, Lee, S.-C.* (2011) "The effect of narrow bandwidth infrared radiation on the growth of Escherichia coli" Applied Physics Letters 99, 163704. (# equal contribution)
  7. Shih, Y.-Y., Pan, C,-Y, Lee, H., Juan, H.-F., A. Nakagawara, Clagett-Dame, M., Tsay, Y.-G., Hsieh, F.-J., Hsu, W.-M.*, Liao, Y.-F. * (2011) "Nuclear GRP75 binds retinoic acid receptors to promote neuronal differentiation of neuroblastoma" PLoS ONE 6(10):e26236
  8. Chen, S.-T., Jeng, Y.-M., Chang, C.-C., Chang, H.-H., Huang, M.-C., Juan, H.-F., Hsu, C.-H., Lee, H.-Y., Liao, Y.-F, Lee, Y.-L., Hsu, W.-M.*, Lai, H.-S.* (2011) "Insulin-like growth factor II mRNA-binding protein 3 expression predicts unfavorable prognosis in patients with neuroblastoma" Cancer Science 102:2191-2198.
  9. Lee, C.-H., Huang, H.-C. * , Juan, H.-F. * (2011) "Reviewing ligand-based rational drug design: the search for an ATP synthase inhibitor" International Journal of Molecular Sciences 12, 5304-5318.
  10. Chen, C.-M., Lin, C.-H., Juan, H.-F. , Hu, F.-J., Hsiao, Y.-C., Chang, H.-Y., Chao, C.-Y., Chen, I.-C., Lee, L.-C., Wang, T.-W., Chen, Y.-T., Chen, Y.-T., Lee-Chen, G.-J. * , Wu, Y.-R. (2011) ATP13A2 variability in Taiwanese Parkinson's disease. Am J Med Genet B Neuropsychiatr Genet. 156:720-729.
  11. Tseng, C.-W., Lin, C.-C., Chen, C.-N. * , Huang, H.-C. * , Juan, H.-F. * (2011) "Integrative network analysis reveals active microRNAs and their functions in gastric cancer" BMC Systems Biology 5:99.
  12. Tseng, C.-W., Yang, J.-C., Chen, C.-N. * , Huang, H.-C., Chuang, K.-N., Lin, C.-C., Lai, H.-S., Lee, P.-H., Chang, K.-J., Juan, H.-F. * (2011) " Identification of 14-3-3β in human gastric cancer cells and its potency as a diagnostic and prognostic biomarker " Proteomics 11:2423-2439.
  13. Chen, J.-Y., Huang, S.-M., Tang, Y.-A., Juan, H.-F. , Wu, L.-W., Sun, Y.-C., Wang, S.-C., Wu, K. W., Balraj, G., Chang, T.-T., Li, W.-S. * , Cheng, H.-C. * , Wang, Y.-C. * (2011) "A novel sialyltransferase inhibitor suppresses FAK/paxillin and angiogenesis signaling and cancer metastasis" Cancer Research 71:473-483.
  14. Chen, C-Y, Chen, S.-T., Fuh, C.-S. Juan, H.-F. * , Huang H.-C. * (2011) "Coregulation of Transcription Factors and microRNAs in Transcriptional Regulatory Network" BMC Bioinformatics 12(Suppl 1):S41.
  15. Lin, C.-C., Hsiang, J.-T., Wu, C.-Y., Oyang, Y.-J., Juan, H.-F. * , Huang H.-C. * (2010) "Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy" BMC Systems Biology 4:138.
  16. Chang, H.-H., Lee, H.-Y., Hu, M.-K., Tsao, P.-N., Juan, H.-F. , Huang, M.-C., Shih, Y.-Y., Wang, B.-J., Jeng, Y.-M., Chang, C., Huang, S.-F., Y.-G. Tsay, Hsieh, F.-J., Lin, K.-H. * , Hsu, W.-M. * , and Liao, Y.-F * . (2010) "Notch1 expression predicts an unfavorable prognosis and serves as a therapeutic target of patients with neuroblastoma" Clinical Cancer Research 16:4411-4420.
  17. Hsu, J.-W., Huang H.-C. , Chen, S.-T., Wong, C.-H. , Juan, H.-F. * (2009) " Ganoderma lucidum polysaccharides induce macrophage-like differentiation in human leukemia THP-1 cells via caspase and p53 activation" Evidence-Based Complementary and Alternative Medicine ; doi: 10.1093/ecam/nep107
  18. Hwang Y.-C., Lin C.-C., Chang J.-Y., Mori H., Juan, H.-F. * , Huang H.-C. * (2009) "Predicting essential genes based on network and sequence analysis" Molecular BioSystems 5:1672–1678.
  19. Lin, C.-C., Juan, H.-F. , Hsiang, J.-T., Hwang, Y.-C., Mori, H. * , Huang, H.-C. * (2009) "Essential core of protein-protein interaction network in Escherichia coli " Journal of Proteome Research 8(4):1925-1931.
  20. Chang, Y.-M., Juan, H.-F. , Lee, T.-Y., Chang, Y.-Y., Yeh, Y.-M., Li, W.-H. * , Shih, A. C.-C. (2008) "Prediction of human miRNAs using tissue-selective motifs in 3' UTRs" Proc. Natl. Acad. Sci. U S A 105, 17061-17066. ( Highlighted in Nature Biotechnology and in Science-Business eXchange (SciBX) )
  21. Fang, Y.-C., Huang, H.-C. , Chen, H.-H. and Juan, H.-F. * (2008) "TCMGeneDIT: a database for associated traditional Chinese medicine, gene and disease information using text mining" BMC Complementary and Alternative Medicine 8:58.
  22. W.-M. Hsu, H.-Y. Lee, Juan, H.-F. , Y.-Y. Shih, B-J. Wang, C.-Y. Pan, Y.-M. Jeng, H.-H. Chang, M.-Y. Lu, K.-H. Lin, H.-S. Lai, W.-J. Chen, Y.-G. Tsay * , Y.-F. Liao * , F.-J. Hsieh * (2008) "Identification of GRP75 as an Independent Favorable Prognostic Marker of Neuroblastoma by a Proteomics Analysis" Clinical Cancer Research 14:6237-6245.
  23. Hsu, C.-W., Juan, H.-F. * , Huang, H.-C. * (2008) "Characterization of microRNA-Regulated Protein-Protein Interaction Network" Proteomics 8:1975-1979.
  24. Lin, L.-L., C.-N. Chen*, Lin, W.-C., Lee, P.-H., Chang, K.-J., Lai, Y.-P., Wang, J.-T., Juan, H.-F. * (2008) "Annexin A4: A novel molecular marker for gastric cancer with Helicobacter pylori infection using proteomics approach " Proteomics: clinical applications 2:619-634.
  25. Chen, S.-T., Pan, T.-L., Juan, H.-F. , Chen, T.-Y., Lin, Y.-S., Huang, C.-M. * (2008) "Breast Tumor Microenvironment: Proteomics Highlights the Treatments Targeting Secretome and Extracellular Matrix" Journal of Proteome Research 7:1379-1387.
  26. Huang, T.-C., Chang, H.-Y., Hsu, C.-H., Kuo, W.-H., Chang, K.-J., Juan, H.-F. * (2008) "Targeting Therapy on Breast Carcinoma by ATP Synthase Inhibitor Aurovertin B" Journal of Proteome Research 7:1433-1444. ( Science Daily news & American Chemical Society weekly news )
  27. Chen, H.-W., Huang, H.-C., Lin, Y.-S., Chang, K.-J., Kuo, W.-H., Hwa, H.-L., Hsieh, F.-J. * , Juan, H.-F. * (2008) "Comparison and Identification of Estrogen-Receptor Related Gene Expression Profiles in Breast Cancer of Different Ethnic Origins" Breast Cancer: Basic and Clinical Research 1:35-49.
  28. Tan, Y-H., Lee, K.-H., Sun, Y.-C., Juan, H.-F. * , Y.-C. Wang * (2008) "Cytotoxicity and proteomics analyses of OSU 03013 in lung cancer" Clinical Cancer Research 14:1823-1830.
  29. Fang, Y.-C., Huang, H.-C. * , Juan, H.-F. * (2008) "MeInfoText: Associated Gene Methylation and Cancer Information from Text Mining" BMC Bioinformatics 9:22.
  30. Huang, B., Ni, K.-C., Chen, S.-L., Juan, H.-F. * , Chen Y.-M. * (2008) "Elucidating the Growth Regulation of Brassinosteroids in Mung Bean Epicotyls using a Proteomics Approach" Proteomics Research Journal 1: 1-18.
  31. Lien, H.-C., Hsiao, Y.-H., Lin, Y.-S., Yao , Y.-T., Juan, H.-F. , Kuo, W.-H., Hung, M.-C., Chang, K.-J., Hsieh, F.-J. * (2007) "Molecular Signatures of Metaplastic Carcinoma of the Breast by Large-Scale Transcriptional Profiling: Identification of Genes Potentially Related to Epithelial-Mesenchymal Transition." Oncogene 26:7859-7871.
  32. Cheng, K.-C., Huang, H.-C., Chen, J.-H., Hsu, J.-W., Cheng, H.-C., Ou, C.-H., Yang, W.-B., Chen, S.-T., Wong, C.-H. and Juan, H.-F. * (2007) " Ganoderma lucidum polysaccharides in human monocytic leukemia cells: from gene expression to network construction" BMC Genomics 8:411.
  33. Huang, T.-C., Huang, H.-C., Chang, C.-C., Chang, H.-Y., Ou, C.-H., Hsu, C.-H., Chen, S.-T. and Juan, H.-F. * (2007) "An Apoptosis-related Gene Network Induced by Novel Compound-cRGD in Human Breast Cancer Cells." FEBS Letters 581:3517-3522.
  34. Leu, J.-H., Chang, C.-C., Wu, J.-L., Hsu, C.-W., Hirono, I. , Aoki, T., Juan, H.-F. , Lo, C.-F., Kou, G.-H. * , Huang H.-C. * (2007) "Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon ." BMC Genomics 8:120.
  35. Fang, Y.-C., Sun, W.-H.*, Wu, L.-C., Huang, H.-D., Juan, H.-F. , Horng, J.-T.* (2006) "RINGdb: An integrated database for G protein-coupled receptors and regulators of G protein signaling." BMC Genomics 7 :317.
  36. Tseng, H.-W., Juan, H.-F. , Huang, H.-C., Lin, J. Y.-C., Sinchaikul, S., Chen , C.-F., Chen, S.-T. * , Wang * , G.-J. (2006) "A systems biology study of lipopolysaccharide-stimulated responses in rat aortic endothelial cell." Proteomics 6 :5915-5928.
  37. Chen, Y.-R., Juan, H.-F. , Huang, H.-C., Huang, H.-H., Lee, Y.-J., Liao, M.-Y., Tseng, C.-W., Lin, L.-L., M.-Y. Chen, J.-Y., Wang, M.-J., J.-H. Chen * , Y.-J. Chen * (2006) "Quantitative Proteomic and Genomic Profiling Reveals Metastasis-Related Protein Expression Patterns in Gastric Cancer Cells." Journal Proteome Research 5 :2727-2742.
  38. Huang, B., Chu , C.-H., Chen, S.-L., Juan, H.-F. * and Chen, Y.-M. * (2006) "Proteomics Study of Mung Bean Epicotyl Regulated by Brassinosteroid under Chilling Condition." Cellular & Molecular Biology Letters 11 :264-278.
  39. Juan, H.-F. * , Wang, I-H., Huang, T.-C., Li, J.-J., Chen, S.-T., Huang, H.-C. (2006) " Proteomics analysis of a novel compound – cyclic RGD in breast carcinoma cell line MCF-7. " Proteomics 6 :2991-3000. ( Cover Picture )
  40. Lee, T.-Y., Horng, J.-T., Juan, H.-F. , Huang, H.-D., Wu, L.-C., Lin, F.-M., Huang, H.-C (2006) "An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints." Journal of Computational Chemistry 27 :1020-1032.
  41. Horng, J.-T., Lee, T.-Y., Wu, L.-C., Huang, H.-D., Juan, H.-F. , Lin, F.-M. (2005) "MultiProtIdent: Identifying Proteins Using Database Search and Protein-Protein Interactions." Journal Proteome Research 4 :690-697.
  42. Juan, H.-F. * , Chang, S.-C., Huang, H.-C., Chen, S.-T. (2005) "A New Application of Microwave Technology to Proteomics." Proteomics 5 :840-842.
  43. Wu, C.-C., Huang, H.-C., Juan, H.-F. , Chen, S.-T. (2004) " GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data. " Bioinformatics 20 : 3691-3693.
  44. Chen, C.-Y., Oyang, Y.-J., Juan, H.-F. (2004) " Incremental generation of summarized clustering hierarchy for protein family analysis. " Bioinformatics 20 :2586-96.
  45. Juan, H.-F. , Chen, J.-H., Hsu, W.-T., Huang, S.-C., Chen, S.-T., Lin, J. Y. C., Chang, Y.-W. Chiang, C.-Y., Wen, L.-L., Chan, D.-C., Liu, Y.-C., Chen, Y.-J. (2004) "Identification of tumor-associated plasma biomarkers using proteomic techniques: from mouse to human." Proteomics 4 : 2766-2775. ( Cover Picture )
  46. Wu, C.-Y. Jan, J.-T., Ma, H.-H., Kuo, C.-J., Juan, H.-F. , Cheng, Y.-S. E., Hsu, H.-H., Huang, H.-C., Wu, D., Brik, A., Liang, F.-S., Liu, R.-S., Fang , J.-M., Chen, S.-T., Liang , P.-H. and Chi-Huey Wong (2004) "Small molecules targeting Severe Acute Respiratory Syndrome (SARS) human coronavirus." Proc. Natl. Acad. Sci. U S A 101 : 10012-10017.
  47. Juan, H.-F. , Liu, H.-L., Hsu, J.-P. (2004) "Recent developments in structural proteomics: from protein identifications and structure determinations to protein-protein interactions" Current Proteomics 1 : 183-197. (Invited review paper)
  48. Chang, D. T.-H, Chen, C.-Y., Chung, W.-C., Oyang, Y.-J., Juan, H.-F. , Huang, H.-C. (2004) "ProteMiner-SSM: A web server for efficient analysis of similar protein tertiary substructures" Nucleic Acids Research. 32 : W76-82.
  49. Wu, S.-F., Liu, T.-M., Lin, Y.-C., Sytwu, H.-K., Juan, H.-F. , Chen, S.-T., Shen, K.-L., Hsi, S.-C., Hsieh, S.-L. (2004) "Immunomodulatory effect of decoy receptor 3 on the differentiation and function of bone-marrow-derived dendritic cells in non-obese diabetic mice: From regulatory mechanism to clinical implication" Journal of Leukocyte Biology 75 : 1-14.
  50. Juan, H.-F. , Lin, J. Y. C., Chang, W. H., Wu, C. Y., Pan, T. L. Tseng, M. J., Khoo, K. H. and Chen, S. T. (2002) "Biomic study of human myloid leukemia cell (HL-60) differentiated to macrophage using DNA array , proteomic, and bioinformatic analytical methods" Electrophoresis 23 : 2490 -2504.
  51. Sinchaikul, S., Sookkheo, B., Topanuruk, S., Juan, H.-F. , Phutrakul, S., and Chen, S.-T. (2002) "The bioinformatics, functional genomics, and proteomics study of Bacillus sp." J. Chromatogr B 771 : 261-287.
  52. Xu, D.-H., Juan, H.-F. , Nohda, M., Ban, T. (2001) “Optimization of AFLP method in wheat and its application to QTL mapping for spike characters” Breeding Research 3: 25.
  53. Juan, H.-F ., Hung, C.-C., Wang, K.-T., Chiou, S.-H.* (1999) "Comparison of three classes of snake neurotoxins by homology modeling and computer simulation graphics." Biochem Biophys Res Commun. 257 : 500-510.

研討會論文：

Peer-reviewed

  1. Yang, R.-T., Juan, H.-F., and Chen, M.-S. (2003) “Using Discretization Techniques to Discover Trends and Differential Equations to Infer Gene Networks for Diagnostics” Proceedings in 7th Join Conference on Information Sciences, North Carolina, USA, 962-966.
  2. Chen, C.-Y., Juan H. -F.*, Hsiao P.-J., Chen S.-T., Tseng H.-W., and Oyang Y.-J. (2003) “Design of an Incremental Clustering Package for Protein Function and Family Analysis” The Fifth InternationalSymposium on Multimedia Software Engineering (MSE), Taichung, Taiwan, ROC, December 10-12.
  3. Chang, D. T.-H, Chen, C.-Y., Chung, W.-C., Oyang, Y.-J., Juan, H.-F., Huang, H.-C. (2004) “An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures” IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE2004), Taichung, Taiwan, ROC, May 19-21.

Contributed

  1. Tseng, C.-W., Lin, C.-C. , Huang, H.-C., Chen, C.-N. , Juan, H.-F .* (2010) "Integrative Network Analysis Reveals Key MicroRNAs and Their Functions in Gastric Cancer" (Abstract#P02.114) The 11th International Conference on Systems Biology , Edinburgh , Scotland , UK , October 10-15.
  2. Hsu, W.-M., Shih, Y.-Y., Lee, H.-Y., Juan, H.-F . , Tsay, Y.-G., Liao, Y.-F. (2010) " The interaction between GRP75 and retenoic acid receptor-α/retenoid X receptor-α is essential for retenoic acid-induced neuronal differentiation of neuroblastoma cells " ( Poster Competition Award) . Advances in Neuroblastoma Research , Stockholm, Sweden, June 21-24.
  3. Chang, H.-H., Hsu, W.-M., Juan, H.-F . , Liao, Y.-F., Huang, M.-C., Lee, H.-Y., Hsieh, F.-J. Lin, K.-H. (2010) " Microarray-based pathway analysis leads to the identification of potential molecularmechanisms underlying gamma-secretase inhibitor-induced differentiatio n" Advances in Neuroblastoma Research , Stockholm, Sweden, June 21-24. 
  4. Wen-Ming Hsu, Pei-Yi Wu, Juan, H.-F. , Lee, H.Y. (2010) " Aromatic hydrocarbon receptor down-regulates MYCN expression and promotes neuronal differentiation of neuroblastoma " Advances in Neuroblastoma Research , Stockholm , Sweden , June 21-24.
  5. Chou, Y.-T., Lin, L.-L., Lin C.-C., Huang, H.-C., Juan, H.-F .* (2010) "The role of annexin A 4 in gastric cancer cell proliferation" (Abstract#P6-005) The 1 5th Joint Biophysics Conference , Taipei , Taiwan , May 19-21.
  6. Liang, S.-P., Lin, C.-C., Wang, H.-W, Juan, H.-F. * , Huang, H.-C. (2010) "Dynamic features of functional network modules during tumor progression" (Abstract#P6-012) The 15 th Joint Biophysics Conference , Taipei , Taiwan , May 19-21.
  7. Chen, C.-Y, Hsu, W.-M., Huang, H.-C., Juan, H.-F. * (2010) "The impact of miR-124 on neuroblastoma cell differentiation" (Abstract#P6-020, Poster Competition Award ) The 15 th Joint Biophysics Conference , Taipei , Taiwan , May 19-21.
  8. Hsu, C.-C., Chou, Y.-T., Huang, H.-C., Shih, A. C.-C., Li, W.-H. * , Juan, H.-F. * (2010) "Gene expression networks of microrna p-27-5p-treated human breast cancer cells" (Abstract#P691, Poster Award ) 25th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 27-28.
  9. Yi, T.-H., Lin, M.-H., Wu, S.-H., Huang, H.-C., Juan, H.-F. * (2010) "Phosphoproteome of Rhodopseudomonas palustris " (Abstract#P690) 25th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 27-28.
  10. Pai, C.-C., Chen, C.-Y., Chen, S.-T., Juan, H.-F. * , Huang, H.-C. * (2010) " Co-regulation of microRNA and transcription factor in Drosophila melanogaster transcriptional and protein-protein interaction networks " (Abstract#P698) 25th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 27-28.
  11. Wu, H.-C., Juan, H.-F. , Hsiang, J.-T., Wu, K.-P. * , Huang, H.-C. * (2010) " Effects of microRNA regulation on noise in gene expression " (Abstract#P699) 25th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 27-28.
  12. Wu, Y.-S., Lin, C.-C., Oyang, Y.-J., Juan, H.-F. * , Huang, H.-C. * (2010) " Integrative Network Analysis Reveals Dynamic Functional Modules in Drosophila melanogaster Embryonic Development " (Abstract# P891 ) 25th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 27-28.
  13. Lin, L.-L., Chou, Y.-T., Huang, H.-C. , Chen, C.-N., Juan, H.-F. * (2009) "Gene network of Helicobacter pylori-infected host cell: annexin A4-involved signaling and regulation in gastric cancer" (Abstract#2.014) The 10th International Conference on Systems Biology , Stanford , California , USA , August 30-Sepetmber 4.
  14. Hu, C.-W., Huang, H.-C., Liao, J. C., Juan, H.-F. * (2009) " Elucidating regulation of carbon dioxide assimilation in R. palustris using synthetic biology and proteomics approach " (Abstract# T02 ) 2009 TPS International Proteomics Conference and 5 th AOHUPO MPI Workshop , Taipei, Taiwan, June 19-20.
  15. Chang, H.-Y., Huang, T.-C., Wei, Y.-C., Huang, H.-C. , Wang, Y.-C., Juan, H.-F. * "ATP synthase, a new target for non-small cell lung cancer (NSCLC) therapy" (Abstract#C07, Selected Oral Presentation ) 2009 TPS International Proteomics Conference and 5 th AOHUPO MPI Workshop , Taipei, Taiwan, June 19-20.
  16. Lin, L.-L., Chou, Y.-T., Huang, H.-C., Chen, C.-N., Juan, H.-F. * "Gene network of Helicobacter pylori -infected host cell: annexin A4-involved signaling and regulation in gastric cancer" (Abstract#C06, Poster Award ) 2009 TPS International Proteomics Conference and 5 th AOHUPO MPI Workshop , Taipei , Taiwan , June 19-20.
  17. Tseng, C.-W., Chen, C.-N. * , Huang, H.-C., Juan, H.-F. * (2009) " 14-3-3 β, a Novel Biomarker for Early Detection and Prognosis in Gastric Cancer" (Abstract#C04) 2009 TPS International Proteomics Conference and 5 th AOHUPO MPI Workshop , Taipei , Taiwan , June 19-20.
  18. Hu, P.-Y., Huang, H.-C., Chen, C.-N., Juan, H.-F. * (2009)"Elucidating Regulatory Mechanism of Estrogen Receptors in Helicobacter pylori-infected Gastric Cancer" (Abstract#B02) 2009 TPS International Proteomics Conference and 5 th AOHUPO MPI Workshop , Taipei , Taiwan , June 19-20.
  19. Tseng, C.-W., Chen, C.-N.*, Juan, H.-F. * (2009) " 14-3-3 β, a Novel Biomarker for Early Detection and Prognosis in Gastric Cancer" (Abstract# O5 , Oral Presentation ) 24th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 21-22.
  20. Hu, C.-W., Huang, H.-C., Liao, J. C., Juan, H.-F. * (2009) " Regulation of Carbon Dioxide Assimilation in R. palustris Through CBB Genes and GroEL Overexpression " (Abstract# O6 , Oral Presentation ) 24th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 21-22.
  21. Hu, P.-Y., Huang, H.-C., Juan, H.-F. * (2009) "Elucidating Regulatory Pathway of Estrogen Receptors in Helicobacter pylori -infected Gastric Cancer" (Abstract# O29 , Oral Presentation ) 24th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 21-22.
  22. Chen, C.-Y., Juan, H.-F. * , Huang, H.-C. * (2009) " Co-regulation of microRNAs in Transcriptional Regulatory Network " (Abstract# O31 , Oral Presentation ) 24th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 21-22.
  23. Chang, Y.-Y., Lee, T.-Y., Huang, H.-C., Shih, A. C.-C., Li, W.-H., Juan, H.-F. * (2009) " Overexpression of Novel MicroRNA P-27-5p Enhances G0/G1 Arrest in Breast Cancer Cells " (Abstract# O44 , Oral Presentation ) 24th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 21-22.
  24. Chang, H.-Y., Huang, H.-C., Huang, T.-C., H. Mori, Juan, H.-F. * (2008) "Application for biofuel production: development of 1-Butanol tolerant Escherichia coli " (Poster7 & Short Talk4 ) 4th International Symposium of the Kanagawa University-National Taiwan University Exchange Program 2008 , Taipei, Taiwan, Dec. 27.
  25. Huang, T.-C., Chang, H.-Y., Hsu, C.-H., Kuo, W.-H., Chang, K.-J., Juan, H.-F. * (2008) "Targeting Therapy on Breast Carcinoma by ATP Synthase Inhibitor Aurovertin B" (Poster8) 4th International Symposium of the Kanagawa University-National Taiwan University Exchange Program 2008 , Taipei, Taiwan, Dec. 27.
  26. Tseng, C.-W., Chen, C.-N., Juan, H.-F. * (2008) "14-3-3 b is a novel biomarker for early detection and prognosis in gastric cancer" (Abstract#P-44, 1 st Prize ) 2008 Taiwan – Japan Proteomics Symposium , Taipei, Taiwan, Dec. 03 - 05.
  27. Hu, C.-W., Huang, H.-C., Juan, H.-F. * (2008) "Regulation of carbon dioxide assimilation in R. palustris through CBB gene and GroEL overexpression" (Abstract#P-58, 3 rd Prize ) 2008 Taiwan – Japan Proteomics Symposium , Taipei, Taiwan, Dec. 03 - 05.
  28. Lin, C.-C., Juan, H.-F. , Huang, H.-C. (2008) "Comparative Analysis of Co-expressed Protein Interaction Networks Reveals Heart Failure Related Modules" ( Travel Award, Oral presentation ) The 2nd Taiwan-Japan Young Researchers Conference on Computational and Systems Biology , Tokyo, Japan, Nov. 4-6.
  29. Tseng, C.-W., Chen, C.-N., Huang, H.-C., C.-C., Chang, Chang, K.-J., Lee, P.-H., Kuo, M.-L., Jeng, Y.-M., Juan, H.-F. * (2008) "Clinical significance of connective tissue growth factor, its mediated microRNAs and target genes in gastric cancer" (Abstract#B-03) 20 th Federation of Asian and Oceanian Biochemists and Molecular Biologists (FAOBMB) symposium , Taipei, Taiwan, Oct. 23~25.
  30. Chang, H.-Y., Huang, H.-C., Huang, T.-C., H. Mori, Juan, H.-F. * (2008) "Development of 1-Butanol Tolerant Microorganism for Biofuel Production" ( Travel Award, Oral presentation ) The Fourth International Meeting on Synthetic Biology (SB4.0), Hong Kong, China, October 10-12.
  31. Hsu, J.-W., Huang, H.-C, Juan, H.-F. * (2008) "Systems Analysis Reveals the Differentiation Mechanism of Leukemia Cells to Macrophages Induced by Ganoderma lucidum Polysaccharides" (Abstract#DS 1-3-18 ) The 9th International Conference on Systems Biology , Goteborg , Sweden , August 22-28.
  32. Cheng, K.-L., Huang, H.-C., Hsu, C.-W., Hsu*, W.-M., Juan, H.-F. * (2008) "Protein-protein Interaction Network of AHR and MYCN Involved in Neuroblastoma" (Abstract#B73) Advances in Neuroblastoma Research (ANR2008) , Chiba , Japan , May 21-24.
  33. Liao, Y.-F., Hsu, W.-M., Lee, H.-Y., Juan, H.-F. , Tsay Y.-G., Shih, Y.-Y., Wang, B.-J., Chang, H.-H., Hsieh, F.-J. (2008) "GRP75 Promotes the Neuronal Differentiation of Neuroblastoma Cells" (Abstract#B124) Advances in Neuroblastoma Research (ANR2008) , Chiba , Japan , May 21-24.
  34. Hsu, W.-M., Liao Y.-F., Lee, H.-Y., Tsay Y.-G., Juan, H.-F. , Hsieh, F.-J., Jeng,Y.-M., Chang, H.-H., Lin, K.-H.(2008) "Identification of GRP75 as an Independent Favorable Prognostic Marker of Neuroblastoma by a Proteomics Analysis" (Abstract#TR45) Advances in Neuroblastoma Research (ANR2008) , Chiba, Japan, May 21-24.
  35. Chang, H.-H., Hsu, W.-M., Lee, H.-Y., Juan, H.-F. , Lai, H.-S., Chen, W.-J., Lee, Y.-L., Liao, Y.-F., Hsieh, F.-J., Lin, K.-H.(2008) "Notch Signaling Pathway and Calreticulin in Neuroblastoma: Interactions and Prognostic Significance" (Abstract#TR115) Advances in Neuroblastoma Research (ANR2008) , Chiba, Japan, May 21-24.
  36. Juan, H.-F. * , Huang, H.-C., Chen, T.-Y., Chang, Y.-L., Hu, C.-W., Yi, T.-H., Bernstein, J. R., Liao, J. C. (2008) "Overexpression of Calvin Cycle Genes in Rhodopseudomonas palustris Improves the Efficiency of Carbon Dioxide Fixation" (Abstract#23) An International Symposium: Biotechnology for Better Crops, Energy and Health: ABRC 10thAnniversary , Taipei, Taiwan, April 29-May 1.
  37. Chang, H.-Y., Huang, H.-C., Huang, T.-C., Mori, H., Juan, H.-F. * (2008) "Application for Biofuel Production: Development of 1-Butanol Tolerant Escherichia coli " (Abstract#24) An International Symposium: Biotechnology for Better Crops, Energy and Health: ABRC 10thAnniversary , Taipei , Taiwan , April 29-May 1.
  38. Lee , T.-A., Juan, H.-F. * (2008) "Identification of human novel miRNAs and their targets" (Abstract# O115 , Oral Presentation ) 23th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 29-30.
  39. Hsu, J.-W., Huang, H.-C , Cheng, K.-C., Chen, S.-T., Wong, C.-H., Juan, H.-F. * (2008) " Ganoderma lucidum polysaccharides induce apoptosis and differentiation in human monocytic leukemia cell line THP-1" (Abstract# O107 , Oral Presentation ) 23th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 29-30.
  40. Huang, T .-C., Chang, H.-Y., Wang, Y.-C., Juan, H.-F. * (2008) "The effect of ATP synthase inhibitor Aurovertin B in non-small cell lung cancer" (Abstract# O79 , Oral Presentation ) 23th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 29-30.
  41. Chang, H.-Y., Huang, H.-C., Huang, T.-C., Mori, H., Juan, H.-F. * (2008) "Proteomics analysis of 1-butanol tolerant Escherichia coli for bioenergy application" (Abstract# O53 , Oral Presentation ) 23th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 29-30.
  42. Chen, T.-Y., Huang, H.-C., Juan, H.-F. * (2008) "Profiling transcriptome and proteome of Rhodopseudomonas palustris in different metabolic states for bioenergy application" (Abstract# P275) 23th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 29-30.
  43. Wu, C.-Y., Chen, H.-W., Huang, H.-C., Juan, H.-F. * (2008) "Identifying the regulatory relationships between miR-218 and NPY1R in MCF-7 and MDA-MB-231 breast cancer cell lines" (Abstract# P66) 23th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 29-30.
  44. Lin, L.-L., C.-N. Chen*, Lin, W.-C., Lee, P.-H., Chang, K.-J., Lai, Y.-P., Wang, J.-T. and Juan, H.-F. * (2007) "Annexin A4: A novel molecular marker for gastric cancer with Helicobacter pylori infection using proteomics approach" (Abstract#P069) Taiwan Proteomics Society International Conference 2007 (TPSIC2007), NCKU, Tainan , Taiwan , December, 4-5.
  45. Chang, H.-Y., Huang, H.-C. , Mori, H. , Juan, H.-F. * (2007) "Screening and proteomics study of butanol-tolerant E. coli " (Abstract#P80) The Taiwan Society Biochemistry and Molecular Biology Fall Camp ( 台灣生物化學及分子生物學學會 : 馬武督秋令營 ), Hsinchu , Taiwan , October 19-20. ( Poster Award )
  46. Hsu, J.-W., Huang, H.-C., Cheng, K.-C., Chen, S.-T., Wong, C.-H., Juan, H.-F. * (2007) " Ganoderma lucidum polysaccharides induce apoptosis in uman monocytic leukemia cell line" (Abstract#P99) The Taiwan Society Biochemistry and Molecular Biology Fall Camp ( 台灣生物化學及分子生物學學會 : 馬武督秋令營 ), Hsinchu , Taiwan , October 19-20. ( Poster Award )
  47. Huang, T .-C., Chang, H.-Y., Juan, H.-F. * (2007) "Targeting therapy on breast carcinoma by ATP synthase inhibitor Aurovertin B" (Abstract#P19) The Taiwan Society Biochemistry and Molecular Biology Fall Camp ( 台灣生物化學及分子生物學學會 : 馬武督秋令營 ), Hsinchu , Taiwan , October 19-20.
  48. Chang, C.-C., Leu, J.-H., , Wu, J.-L., Hsu, C.-W., Hirono, I., Aoki, T., Juan, H.-F. , Lo, C.-F., Kou, G.-H. * , Huang H.-C. * (2007) "Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon " (Abstract#P92) The Taiwan Society Biochemistry and Molecular Biology Fall Camp ( 台灣生物化學及分子生物學學會 : 馬武督秋令營 ), Hsinchu, Taiwan, October 19-20. ( Poster Award )
  49. Chen, C.-P., Huang, H.-C., Juan, H.-F. * (2007) "MicroRNAs-involved regulatory network of ATRA- and Am80-induced human leukemia cell line HL-60 differentiation" (Abstract#I10) The 8th International Conference on Systems Biology , Long Beach , USA , October 1-6.
  50. Chiu, Y.-W., Juan, H.-F. , Huang, H.-C. (2007) "Prediction of Functional Associated Proteins Using Topological Similarity in Protein-Protein Interaction Network" (Abstract#H14) The 8th International Conference on Systems Biology , Long Beach , USA , October 1-6.
  51. Lin, C.-C., Juan, H.-F. , Hsiang, J.-T., Mori, H., Huang, H.-C. (2007) " An Essential Core of Protein-Protein Interaction Network in Escherichia coli " (Abstract#H15) The 8th International Conference on Systems Biology , Long Beach , USA , October 1-6.
  52. Hsu, C.-W., Juan, H.-F. , Huang , H.-C. (2007) " Characterization of microRNA-Regulated Protein-Protein Interaction Network " (Abstract#H16) The 8th International Conference on Systems Biology , Long Beach , USA , October 1-6.
  53. Hwang, Y.-C, Juan, H.-F. , Huang, H.-C. * (2007) "Predicting Essential Genes Based on Network and Sequence Analysis" (Abstract# P22) 2007 Symposium of Bioinformatics and Systems Biology in Taiwan , Chiayi , Taiwan , September 4-5.
  54. Chen, H.-W., Ni, K.-C., Huang, H.-C., Juan, H.-F. * (2007) "MiLink – a Web Tool to Analyze the Association between Gene Expression Profiles with microRNAs" (Abstract# P23) 2007 Symposium of Bioinformatics and Systems Biology in Taiwan , Chiayi , Taiwan , September 4-5.
  55. Lin, C.-C., J uan, H.-F. , Hsiang, J.-T., Mori, H., Huang, H.-C. * (2007) "An Essential Core of Protein Interaction Network in Escherichia coli" (Abstract# P25) 2007 Symposium of Bioinformatics and Systems Biology in Taiwan , Chiayi , Taiwan , September 4-5.
  56. Chang, Y.-W., Chang, S.-C., Juan, H.-F. * (2007) "Localizomics study in TPA-induced HL-60 cells differentiation into macrophages" (Abstract#SB2) The 12th Symposium on Recent Advances in Biophysics , Miaoli , Taiwan , May 23-25.
  57. Ni, K.-C. , Huang, H.-C., Chen, H.-W., Yi, T.-H., Chen, S.-T. Juan, H.-F. * (2007) "Regulatory mechanism of TPA-induced HL-60 cell differentiation" (Abstract#O031, Oral Presentation) 22th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 17-18.
  58. Shih, C.-Y., Huang, T.-C., Juan, H.-F. * (2007) "Effect of cyclic RGD on phosphoprotein signaling in human breast cancer cell MCF-7" (Abstract# O081, Oral Presentation) 22th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 17-18.
  59. Chen, C.-P., Huang, H.-C., Chen, H.-W., Juan, H.-F. * (2007) " Identification of differenciation related gene networks and micrornas in ATRA- and AM80-treated human HL-60 leukemia cells " (Abstract# P 591, Poster Award ) 22th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 17-18.
  60. Lin, L.-L., Chen, C.-Y., Juan, H.-F. * (2007) " A potential new therapeutic target of gastric cancer: annexin A4 " (Abstract# P 592) 22th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 17-18.
  61. Leu, J.-H., Chang, C.-C., Wu, J.-L., Hirono, I., Aoki, T., Juan, H.-F., Lo, C.-F., Huang, H.-C., and Kou, G.H. (2007) "Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected penaeus monodon " (Abstract# P 587) 22th Joint Annual Conference of Biomedical Sciences , Taipei, Taiwan, March 17-18.
  62. Chen, H.-W. , Huang, H.-C., Lin, Y.-S., Chang, K.-J., Kuo, W.-H., Hwa, H.-L., Hsieh, F.-J., Juan, H.-F.* (2006) "Gene expression profiles reveals association of single nucleotide polymorphisms with estrogen receptor status in breast cancer populations" (Oral Presentation) 2006 International Symposium on Biomedical Engineering , Taipei, Taiwan, December 14-16.
  63. Juan, H.-F. * , Cheng, K.-C., Huang, H.-C., Ou, C.-H., Chen, J.-H., Yang, W.-B., Chen, S.-T., Wong, C.-H. (2006) "Elucidating the molecular regulation of Ganoderma lucidum polysaccharides in human monocytic cells: from gene expression to network construction" The 7th International Conference on Systems Biology , Yokohama , Japan , October 9-11.
  64. Ou, C.-H., Chang, C.-C., Hsia, H.-C., Wang, F.-S., Juan, H.-F. *, Huang, H.-C.* (2006) "BSIP – a web server for systems-biology structure identification program development" The sixth annual Emerging Information Technology Conference (EITC-06), Dallas, USA, Aug 10-12. (Oral presentation)
  65. Lin, C.-C., Hwang, Y.-C., Juan, H.-F. , Mori, H., and Huang, H.-C. (2006) "Topological Characteristics of Essential Genes in the Protein Interaction Network of Escherichia coli" Bioinformatics in Taiwan (Abstract# P15), Taichung , Taiwan , Sep 12-15.
  66. Y.-C. Fang, H.-C. Huang and Juan, H.-F. * (2006) "Text Extraction and Mining of DNA Methylation Information" The sixth annual Emerging Information Technology Conference (EITC-06), Dallas , USA , Aug 10-12. (Oral presentation)
  67. Tseng, C.-W., Juan, H.-F .* (2006) "To investigate the effect of anti- cancer drug 5-FU on the molecular mechanism of gastric cancer cell line SCM1" 20 th Symposium of the Protein Society , San Diego , California , U.S, Aug 5-9.
  68. Huang, T.-C. , Chang, C.-C., Huang, H.-C., Juan, H.-F. * (2006) "Induction of caspase-dependent cell death pathway by cyclic RGD in human breast carcinoma cell line MCF-7" 20th Annual symposium of the Protein Society & 20th Anniversary Celebration , San Diego, California, U.S.A., Aug 5-9.
  69. Juan, H.-F. *, Cheng, K.-C., Huang, H.-C., Ou., C.-H., Chen, J.-H., Yang, W.-B., Chen, S.-T., Wong, C.-H. (2006) " Elucidating the molecular regulation of Ganoderma lucidum polysaccharides in human monocytic cells: from gene expression to network construction " The 11th Symposium on Recent Advances in Biophysics , Taipei , Taiwan , May 24-26, 2006.
  70. Ou, C.-H., Chang, C.-C., Hsia, H.-C., Wang, F.-S., Juan, H.-F. *, Huang, H.-C.* (2006) "BSIP – a web server for systems-biology structure identification program development" 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan , Feb 13-16. (Abstract#P028, 2 nd Poster Award )
  71. Bow, Y.-Y., Chang, J.-Y., Juan, H.-F. , Mori, H., Huang, H.-C. (2006) "Elucidating the essentiality of essential genes in E. coli K-12" 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan , Feb 13-16. (Abstract#P027, 1 st Poster Award )
  72. Hwang, Y.-C., Lin, C.-C., Juan, H.-F. , Mori, H., Huang, H.-C. (2006) "Topologial characteristics of protein interaction network and roles of essential genes in E. COLI K-12" 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan , Feb 13-16. (Abstract#P026)
  73. Li, J.-J., Juan, H.-F. *, Chung, I-F., Huang, H.-C.* (2006) "Identification of RNA-binding protein residues using machine learning approaches" 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan , Feb 13-16. (Abstract#P025)
  74. Lin, N., Chiou, S.-H., Juan, H.-F. *, Huang, H.-C.* (2006) "Bioinformatics approach to the study of the correlation between gene expression profiles and protein-protein interactions using matrices" 4th Asia-Pacific Bioinformatics Conference (APBC2006), Taiwan , Feb 13-16. (Abstract#P029)
  75. Huang, T.-C. Chang, C.-C., Huang, H.-C., Juan, H. F. * (2005) "Cyclic RGD-induced cell death in human breast carcinoma cell line MCF-7: the influence of caspase pathway" The 6 th International Conference on Systems Biology , Boston , MA , U. S. A. , October 19-24, 2005.
  76. Bow, Y.-Y., Chang, J.-Y., Juan, H. F. , Mori, H., Huang, H.-C. (2005) "Elucidating the essentiality of essential genes in E. coli K-12" The 6 th International Conference on Systems Biology , Boston, MA, U. S. A., October 19-24.
  77. Tseng, H.-W., Chen, S.-T., Juan, H. F. , Huang, H.-C., Chen, C.-F., and Wang, G.-J. (2005) "High-throughput Proteomic Analysis of the Anti-inflammatory Effect of Berberine in Rat Cultured Vascular Endothelial Cells" (Abstract#O100, Oral Presentation) 20th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 26-27.
  78. Chang, S.-C., Huang, H.-C., Chen , S.-T., and Juan, H.-F.* (2005) " A Subcellular Proteomics Analysis of Human Myeloid Leukemia Cells Differentiation to Macrophages Using Microwave Technology Combined with Mass Spectrometry" (Abstract#O87, Oral Presentation) 20th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 26-27.
  79. Huang , T.-C., Huang, H.-C. Chen , S.-T., and Juan, H.-F.* (2005) "Cyclic RDG-induced Cell Death in Human Breast Carcinoma (MCF-7) Cells: the Influence of Caspase Pathway" (Abstract#O80, Oral Presentation) 20th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 26-27.
  80. Li, J.-J. Juan, H.-F. , Ko, R.-S., Chung, I-F., Huang, H.-C. (2005) "Identification of RNA-binding Protein Residues Using Machine Learning Approaches" (Abstract#O39, Oral Presentation) 20th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 26-27.
  81. Chang, H.-Y., Chien, K.-C., Wang, Y.-C., and Juan H.-F.* (2005) "Discovery of Biomarkers in Human Lung Cancer by Proteomics Approach" (Abstract#P567, Best Poster Paper ) 20th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , March 26-27.
  82. Li, J.-J., Huang, H.-C., Ko, R.-S., Chen, S.-T., Juan, H.-F.* (2004) "B GSSJ: an Interactive Tool for Biological Interpretation of Gene Expression and Proteomics Data " (Abstract#258, 2 nd Priz e) Bioinformatics in Taiwan , Taipei , Taiwan , September 9-11.
  83. Peng, C.-L., Lin, Y.-C., Huang, H.-C., ao, C. -Y., Chen, S.-T., and Juan, H.- F. * (2004) "ProtExt: a Web-based Protein-protein Interaction Extraction System for PubMed Abstract" (Abstract#A-2) 12 th International Conference on Intelligent Systems for Molecular Biology (ISMB) and Conference on Computational Biology (ECCB), Glasgow, Scotland, Jul 31-Aug 4.
  84. Juan, H.-F. * , Chang, S.-C., Huang, H.-C., Chen, S.-T. (2004) "A New Application of Microwave Technology to Proteomics" International Symposium on Microwave Science and Its Application to Related Fields 2004 , Takamatsu , Japan , July 26-30. (Financial Support)
  85. Wang, I-H., Huang, H.-C., Chen, S.-T., Juan, H.-F. * (2004) " Proteomic Analysis of a Novel Compound – Cyclic RGD in Breast Carcinoma Cell Line MCF-7 Using Biomic Approach " (Abstract#PB18) 3 rd International Proteomics Conference 2004 (IPC'03), Taipei , Taiwan , May 15-17.
  86. Tseng, H. W., Wang, G. J., Juan, H. F. , Chen, C. F., Huang, H. C., and Chen, S. T. (2004) " Systems Biology Study of LPS-induced Inflammatory Responses Endothelial Cells " (Abstract#PB14) 3 rd International Proteomics Conference 2004 (IPC'03), Taipei, Taiwan, May 15-17.
  87. Chang, S.-C., Topanurak, S., Chen, S.-T., Juan, H.-F. * (2004) " A New Application of Microwave Technology to Proteomics " (Abstract#PA24) 3 rd International Proteomics Conference 2004 (IPC'03), Taipei , Taiwan , May 15-17.
  88. Li, J.-J., Huang, H.-C., Ko, R.-S. Chen, S.-T., Juan, H.-F. * (2004) "BGSSJ: an Interactive Tool for Biological Interpretation of Gene Expression and Proteomics Data" (Abstract#PA12, Top 10 Prize ) 3 rd International Proteomics Conference 2004 (IPC'03), Taipei , Taiwan , May 15-17.
  89. Peng, C.-L., Lin, Y.-C., Huang, H.-C., ao, C. -Y., Chen, S.-T., and Juan, H.- F. * (2004) "ProtExt: a Web-based Protein-protein Interaction Extraction System for PubMed Abstract" (Abstract#PA05) 3 rd International Proteomics Conference 2004 (IPC'03), Taipei , Taiwan , May 15-17.
  90. Juan, H.-F.* , Huang, H.-C., and Chen, S.-T. (2003) "The Molecular Effect of cyclic-RGD peptide on MCF-7 Cells"(Poster #149) The 4 th International Conference on Systems Biology , Saint Louis, MO, U. S. A., November 5-9.
  91. Yang, R.-T., Juan, H.-F. , and Chen, M.-S. (2003) "Using Discretization Techniques to Discover Gene Patterns for Diagnostics" (Abstract#PC12). 4th East Asian Biophysics Symposium (4th EABS) , Taipei , Taiwan , November 3-6.
  92. Huang, S.-C., Chen, J.-H., Juan, H.-F. , Chen, S.-T., Hsu, W.-T., Chen, Y.-J., Chiang, C.-Y., Chang, Y.-W. (2003) "Identification of Acute Phase Proteins in Sera from Tumor-burden Mice: a Proteomics-based Approach" (Abstract#341). 18th Joint Annual Conference of Biomedical Sciences , Taipei , Taiwan , Mar. 22-23.
  93. Juan, H.-F. , Chen, J. -H., Shyu, W. T., Huang, S.-C., Chiang, C.-Y., Chang, Y.W., Chen, S.-T., Chen, Y.J. (2002) "Tumor Marker Discovery by Proteomic Approach" (Abstract#BC05) 70 th Chinese Chemical Society Annual Meeting , Taipei, Taiwan, Oct. 25-27.
  94. Xu, D.-H., Juan, H.-F. , Nohda, M., Ban, T. (2001) "QTLS mapping of type I and type II resistance to FHB in wheat." National Fusarium Head Blight Forum , Erlanger , KY , U. S. A. , December 8 -10, Biotechnology 40-42.

專書及專書論文：

  1. Juan, H.-F. and Huang, H.-C. (2007) "Bioinformatics: Microarray Data Clustering and Functional Classification" in Microarrays (2nd ed): Applications and Data Analysis, ed. Jang B. Rampal (The humana press inc.), pp. 401-414.

  2. 陳水田、曾銘仁、阮雪芬等 (2003) 基因體科學入門, 藝軒. [A Primer of Genome Science, Gibson, G. and Muse, S. V., Sinauer Associates Inc. (2001)]
 
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